Whitelisting my application (ISV)

I have an application I created that I've made an MSI installer for to be installed off of the web. I want to whitelist this application so I don't get false positives. There are three components of course to this installer.

1. Setup.exe.

2. The MSI package (installer.msi ...).

3. The actual executable that gets installed (app.exe).

Which of these component(s) do I register in the whitelist request form (with the SHA and file size and everything else)?

I'm assuming it's setup.exe as this starts the whole installation process, but do I need to register other components (the actual executable that is installed)?

Thanks for your help!

Jon Fernandez